PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010542479.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family DBB
Protein Properties Length: 234aa    MW: 26282.6 Da    PI: 5.1704
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010542479.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.97.3e-0788131441
        zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 
                       C+ +e+ e++  C +++  lC++C ++ H        H++v+
  XP_010542479.1  88 IQCEVCEKAEAEVLCCSDEAVLCKSCDEKVHTAnklfqrHNRVT 131
                     57*****************************5578888898886 PP

2zf-B_box22.22.9e-07143179438
        zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 
                     + C+ ++e     fC +++ llC++C  ++Hk   H+
  XP_010542479.1 143 PLCDICQERTGYVFCLEDRALLCKNCDGAIHKCtsHQ 179
                     78******99********************9545676 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.0E-1185132IPR000315B-box-type zinc finger
PROSITE profilePS5011910.5885132IPR000315B-box-type zinc finger
CDDcd000211.32E-588132No hitNo description
PROSITE profilePS501199.001140184IPR000315B-box-type zinc finger
SMARTSM003361.8E-9140183IPR000315B-box-type zinc finger
CDDcd000217.98E-7143182No hitNo description
PfamPF006431.2E-5143179IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MCSRELVNVL ASAAILLWSN YFITRRSGGL FFRPINAFWA ELLGELRDEN FQDFAAWEGN  60
GEFERTMLQN SSLLTFQGRT QTNPEMKIQC EVCEKAEAEV LCCSDEAVLC KSCDEKVHTA  120
NKLFQRHNRV TLLKHNSTSS GIPLCDICQE RTGYVFCLED RALLCKNCDG AIHKCTSHQR  180
FLASGVHVSL QSCIEDSECS TSLSSSIFQI HPSGESEAGN SEVDLEKERH EGNR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010542479.11e-174PREDICTED: B-box zinc finger protein 23 isoform X4
SwissprotO826171e-60BBX23_ARATH; B-box zinc finger protein 23
TrEMBLE4MXU42e-61E4MXU4_EUTHA; mRNA, clone: RTFL01-35-E09
TrEMBLV4N0M72e-61V4N0M7_EUTSA; Uncharacterized protein
TrEMBLD7LY293e-61D7LY29_ARALL; Zinc finger (B-box type) family protein
STRINGfgenesh2_kg.6__3002__AT4G10240.18e-61(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10240.14e-55DBB family protein